RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os07g30970.1 View Network Show in Genome Browser |
Other Names | Os07g0492000 |
Description | nucleoside diphosphate kinase, putative, expressed |
Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 18334872-18337487 Nucleotide Length: 450 |
Protein-coding | LOC_Os07g30970 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0008150 | biological_process | Biological Process | IEA | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0016301 | kinase activity | Molecular Function | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0005575 | cellular_component | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005576 | extracellular region | Cellular Component | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0005777 | peroxisome | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os01g45370 LOC_Os03g10520 LOC_Os01g74190 LOC_Os05g40820 LOC_Os01g33050 LOC_Os07g19190 LOC_Os07g12250 LOC_Os01g59990 LOC_Os01g70010 LOC_Os03g13800 LOC_Os06g16290 More.. |
Downstream Genes | LOC_Os09g32976 LOC_Os08g23710 LOC_Os10g27174 LOC_Os10g03540 LOC_Os08g44770 LOC_Os10g34180 LOC_Os10g42320 LOC_Os10g35290 LOC_Os07g33850 LOC_Os11g01510 LOC_Os10g39410 More.. |
miRNA Regulations | |
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miRNAs | osa-miR1859 |
Pathways | |
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KEGG Pathways | rn01110 rn01100 rn00230 rn00240 |
Metacyc Pathways | PWY-6126 PWY-6125 PPGPPMET-PWY PWY0-166 PWY-6545 PWY-5687 PWY0-163 DENOVOPURINE2-PWY PWY0-162 |
Reference | |
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PubMed | 15650338 |
Database Links | |
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Gramene | LOC_Os07g30970.1 |
Rice Genome Annotation | LOC_Os07g30970.1 |
Ricechip | LOC_Os07g30970.1 |
KEGG | osa:4343275 dosa:Os07t0492000-01 |
Entrez-Gene | 4343275 |