RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30970.2 View Network Show in Genome Browser |
| Other Names | Os07g0492000 |
| Description | nucleoside diphosphate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 18334872-18337487 Nucleotide Length: 348 |
| Protein-coding | LOC_Os07g30970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45370 LOC_Os03g10520 LOC_Os01g74190 LOC_Os05g40820 LOC_Os01g33050 LOC_Os07g19190 LOC_Os07g12250 LOC_Os01g59990 LOC_Os01g70010 LOC_Os03g13800 LOC_Os06g16290 More.. |
| Downstream Genes | LOC_Os09g32976 LOC_Os08g23710 LOC_Os10g27174 LOC_Os10g03540 LOC_Os08g44770 LOC_Os10g34180 LOC_Os10g42320 LOC_Os10g35290 LOC_Os07g33850 LOC_Os11g01510 LOC_Os10g39410 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1859 |
| Reference | |
|---|---|
| PubMed | 15650338 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30970.2 |
| Rice Genome Annotation | LOC_Os07g30970.2 |
| Ricechip | LOC_Os07g30970.2 |
| KEGG | osa:4343275 dosa:Os07t0492000-01 |
| Entrez-Gene | 4343275 |