RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g32080.1 View Network Show in Genome Browser |
| Other Names | Os07g0504200 |
| Description | transcription initiation factor IIB, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 19068310-19069374 Nucleotide Length: 1065 |
| Protein-coding | LOC_Os07g32080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22740 LOC_Os03g22730 LOC_Os03g45410 LOC_Os03g08280 LOC_Os02g18550 LOC_Os03g18410 LOC_Os03g10340 LOC_Os01g39630 LOC_Os03g21550 LOC_Os02g04100 LOC_Os06g14750 More.. |
| Downstream Genes | LOC_Os10g29660 LOC_Os08g01130 LOC_Os12g39070 LOC_Os11g29190 LOC_Os08g01620 LOC_Os12g21798 LOC_Os12g03880 LOC_Os11g04070 LOC_Os07g48300 LOC_Os09g36710 LOC_Os08g43540 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g32080.1 |
| Rice Genome Annotation | LOC_Os07g32080.1 |
| Ricechip | LOC_Os07g32080.1 |
| KEGG | dosa:Os07t0504200-00 |