RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g32900.1 View Network Show in Genome Browser |
| Other Names | Os07g0513200 |
| Description | PPR repeat containing protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 19668378-19673208 Nucleotide Length: 2265 |
| Protein-coding | LOC_Os07g32900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g17610 LOC_Os06g05090 LOC_Os04g53770 LOC_Os01g73950 LOC_Os02g49620 LOC_Os01g41000 LOC_Os06g05190 LOC_Os01g37850 LOC_Os01g42730 LOC_Os01g46080 LOC_Os03g05900 More.. |
| Downstream Genes | LOC_Os07g32920 LOC_Os08g28980 LOC_Os10g40740 LOC_Os12g37370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 osa-miR3979-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g32900.1 |
| Rice Genome Annotation | LOC_Os07g32900.1 |
| Ricechip | LOC_Os07g32900.1 |
| KEGG | osa:4343368 dosa:Os07t0513200-01 |
| Entrez-Gene | 4343368 |