RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g34598.2 View Network Show in Genome Browser |
| Other Names | Os07g0530100 |
| Description | tyrosyl-DNA phosphodiesterase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 20739506-20749458 Nucleotide Length: 1752 |
| Protein-coding | LOC_Os07g34598 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05760 LOC_Os03g03910 LOC_Os01g21860 LOC_Os06g51150 LOC_Os02g32160 LOC_Os03g58810 LOC_Os06g38470 LOC_Os05g29010 LOC_Os03g12300 LOC_Os03g55470 LOC_Os01g65780 More.. |
| Downstream Genes | LOC_Os08g41480 LOC_Os11g42160 LOC_Os08g40820 LOC_Os08g05840 LOC_Os12g06620 LOC_Os12g43100 LOC_Os08g08220 LOC_Os08g41500 LOC_Os08g44320 LOC_Os09g01630 LOC_Os10g05800 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g34598.2 |
| Rice Genome Annotation | LOC_Os07g34598.2 |
| Ricechip | LOC_Os07g34598.2 |
| KEGG | osa:4343446 dosa:Os07t0530100-01 |
| Entrez-Gene | 4343446 |