RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g38540.1 View Network Show in Genome Browser |
| Other Names | Os07g0572900 |
| Description | 40S ribosomal protein S13, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23153184-23154093 Nucleotide Length: 456 |
| Protein-coding | LOC_Os07g38540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g10660 LOC_Os05g30530 LOC_Os04g28180 LOC_Os03g18570 LOC_Os03g18580 LOC_Os05g27940 LOC_Os01g67134 LOC_Os03g05980 LOC_Os02g28810 LOC_Os07g10720 LOC_Os02g27760 More.. |
| Downstream Genes | LOC_Os11g38959 LOC_Os11g29190 LOC_Os11g06750 LOC_Os11g04070 LOC_Os12g07010 LOC_Os12g03880 LOC_Os08g03640 LOC_Os11g05562 LOC_Os08g44480 LOC_Os09g31180 LOC_Os08g10608 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g38540.1 |
| Rice Genome Annotation | LOC_Os07g38540.1 |
| Ricechip | LOC_Os07g38540.1 |
| KEGG | osa:4343679 dosa:Os07t0572900-01 |
| Entrez-Gene | 4343679 |