RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39070.1 View Network Show in Genome Browser |
| Other Names | Os07g0578600 |
| Description | 5-formyltetrahydrofolate cyclo-ligase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23419018-23422454 Nucleotide Length: 849 |
| Protein-coding | LOC_Os07g39070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g04600 LOC_Os05g01560 LOC_Os02g13140 LOC_Os01g72870 LOC_Os06g45070 LOC_Os03g61070 LOC_Os04g53230 LOC_Os06g40940 LOC_Os01g51410 LOC_Os07g36500 LOC_Os05g39050 More.. |
| Downstream Genes | LOC_Os12g07020 LOC_Os08g10570 LOC_Os09g29190 LOC_Os12g37640 LOC_Os12g37630 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00670 rn01100 |
| Metacyc Pathways | PWY-3841 PWY-2201 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39070.1 |
| Rice Genome Annotation | LOC_Os07g39070.1 |
| Ricechip | LOC_Os07g39070.1 |
| KEGG | osa:4343714 dosa:Os07t0578600-01 |
| Entrez-Gene | 4343714 |