RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39270.2 View Network Show in Genome Browser |
| Other Names | Os07g0580900 |
| Description | polyprenyl synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23507425-23509293 Nucleotide Length: 1101 |
| Protein-coding | LOC_Os07g39270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g09190 LOC_Os06g05100 LOC_Os05g33840 LOC_Os01g50760 LOC_Os03g45400 LOC_Os05g05830 LOC_Os06g33930 LOC_Os05g47530 LOC_Os05g45770 LOC_Os01g67560 LOC_Os04g40980 More.. |
| Downstream Genes | LOC_Os11g14230 LOC_Os09g15810 LOC_Os08g03370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39270.2 |
| Rice Genome Annotation | LOC_Os07g39270.2 |
| Ricechip | LOC_Os07g39270.2 |
| KEGG | osa:4343721 dosa:Os07t0580900-01 |
| Entrez-Gene | 4343721 |