RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39320.1 View Network Show in Genome Browser |
| Other Names | Os07g0581700 |
| Description | homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23559520-23560868 Nucleotide Length: 723 |
| Protein-coding | LOC_Os07g39320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48170 LOC_Os05g48820 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os04g49420 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os04g45010 LOC_Os03g15940 More.. |
| Downstream Genes | LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os10g35930 LOC_Os08g32080 LOC_Os10g10360 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39320.1 |
| Rice Genome Annotation | LOC_Os07g39320.1 |
| Ricechip | LOC_Os07g39320.1 |
| KEGG | osa:4343726 dosa:Os07t0581700-01 |
| Entrez-Gene | 4343726 |