RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39710.1 View Network Show in Genome Browser |
| Other Names | Os07g0585800 |
| Description | NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23797954-23802656 Nucleotide Length: 480 |
| Protein-coding | LOC_Os07g39710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g43850 LOC_Os03g59220 LOC_Os06g50000 LOC_Os03g50540 LOC_Os01g49190 LOC_Os03g18420 LOC_Os07g10500 LOC_Os04g24520 LOC_Os05g34770 LOC_Os03g19890 LOC_Os07g31300 More.. |
| Downstream Genes | LOC_Os09g08910 LOC_Os10g17280 LOC_Os10g42840 LOC_Os07g44650 LOC_Os08g33720 LOC_Os07g49520 LOC_Os08g14860 LOC_Os07g45090 LOC_Os11g48040 LOC_Os08g06430 LOC_Os08g05530 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | AERESPDON-PWY ANARESPDON-PWY PWY-5083 PWY-4302 PWY-3781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39710.1 |
| Rice Genome Annotation | LOC_Os07g39710.1 |
| Ricechip | LOC_Os07g39710.1 |
| KEGG | osa:4343746 dosa:Os07t0585800-01 |
| Entrez-Gene | 4343746 |