RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39920.1 View Network Show in Genome Browser |
| Other Names | Os07g0588200 |
| Description | formin, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23944536-23950464 Nucleotide Length: 2325 |
| Protein-coding | LOC_Os07g39920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51600 LOC_Os07g38730 LOC_Os03g58890 LOC_Os03g07000 LOC_Os02g58070 LOC_Os07g09630 LOC_Os03g58880 LOC_Os05g41010 |
| Downstream Genes | LOC_Os11g14220 LOC_Os12g29760 LOC_Os10g35470 LOC_Os10g27340 LOC_Os10g31420 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39920.1 |
| Rice Genome Annotation | LOC_Os07g39920.1 |
| Ricechip | LOC_Os07g39920.1 |
| KEGG | osa:4343760 dosa:Os07t0588200-01 |
| Entrez-Gene | 4343760 |