RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g39960.1 View Network Show in Genome Browser |
| Other Names | Os07g0588600 |
| Description | ZOS7-07 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 23973458-23976719 Nucleotide Length: 1137 |
| Protein-coding | LOC_Os07g39960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g12850 LOC_Os07g19560 LOC_Os06g37000 LOC_Os03g51050 LOC_Os03g29350 LOC_Os03g13240 LOC_Os03g13250 LOC_Os01g04950 LOC_Os07g01070 LOC_Os03g13274 LOC_Os06g49220 More.. |
| Downstream Genes | LOC_Os11g37080 LOC_Os09g12800 LOC_Os07g42280 LOC_Os10g02240 LOC_Os10g02260 LOC_Os08g23120 LOC_Os10g22560 LOC_Os10g02220 LOC_Os10g02100 LOC_Os10g02210 LOC_Os08g38410 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g39960.1 |
| Rice Genome Annotation | LOC_Os07g39960.1 |
| Ricechip | LOC_Os07g39960.1 |
| KEGG | osa:4343764 dosa:Os07t0588600-01 |
| Entrez-Gene | 4343764 |