RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g40080.1 View Network Show in Genome Browser |
| Other Names | Os07g0590100 |
| Description | ZOS7-09 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 24055001-24055950 Nucleotide Length: 600 |
| Protein-coding | LOC_Os07g40080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g12850 LOC_Os07g19560 LOC_Os06g37000 LOC_Os03g51050 LOC_Os03g29350 LOC_Os03g13240 LOC_Os03g13250 LOC_Os01g04950 LOC_Os07g01070 LOC_Os03g13274 |
| Downstream Genes | LOC_Os11g37080 LOC_Os09g12800 LOC_Os07g42280 LOC_Os10g02240 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g40080.1 |
| Rice Genome Annotation | LOC_Os07g40080.1 |
| Ricechip | LOC_Os07g40080.1 |
| KEGG | osa:4343773 dosa:Os07t0590100-01 |
| Entrez-Gene | 4343773 |