RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g40250.1 View Network Show in Genome Browser |
| Other Names | Os07g0592100 |
| Description | sex determination protein tasselseed-2, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 24128281-24130559 Nucleotide Length: 903 |
| Protein-coding | LOC_Os07g40250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39490 LOC_Os01g70430 LOC_Os04g32070 LOC_Os01g05840 LOC_Os02g30714 LOC_Os03g62590 LOC_Os02g30690 LOC_Os04g22390 LOC_Os04g44950 LOC_Os04g22380 LOC_Os05g36190 More.. |
| Downstream Genes | LOC_Os07g40260 LOC_Os12g27830 LOC_Os11g07930 LOC_Os11g30560 LOC_Os11g07922 LOC_Os09g39670 LOC_Os10g40020 LOC_Os10g40030 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 rn00860 |
| Metacyc Pathways | PWY-5076 PWY-5078 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5079 PWY-5082 PWY-5188 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g40250.1 |
| Rice Genome Annotation | LOC_Os07g40250.1 |
| Ricechip | LOC_Os07g40250.1 |
| KEGG | osa:4343782 dosa:Os07t0592100-01 |
| Entrez-Gene | 4343782 |