RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g41090.1 View Network Show in Genome Browser |
| Other Names | Os07g0602200 |
| Description | histone deacetylase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 24592004-24598354 Nucleotide Length: 2088 |
| Protein-coding | LOC_Os07g41090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05730 LOC_Os06g37420 LOC_Os01g01960 LOC_Os03g51600 LOC_Os07g03160 LOC_Os01g08200 LOC_Os05g01020 LOC_Os02g06640 LOC_Os02g07160 LOC_Os02g04490 LOC_Os04g53620 More.. |
| Downstream Genes | LOC_Os10g30580 LOC_Os11g14220 LOC_Os09g32740 LOC_Os08g43060 LOC_Os09g35920 LOC_Os09g13680 LOC_Os08g39390 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g41090.1 |
| Rice Genome Annotation | LOC_Os07g41090.1 |
| Ricechip | LOC_Os07g41090.1 |
| KEGG | osa:4343829 dosa:Os07t0602200-01 |
| Entrez-Gene | 4343829 |