RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g41730.1 View Network Show in Genome Browser |
| Other Names | Os07g0608300 |
| Description | OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25007223-25011699 Nucleotide Length: 963 |
| Protein-coding | LOC_Os07g41730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g66240 LOC_Os07g38830 LOC_Os03g61360 LOC_Os04g36620 LOC_Os04g57370 LOC_Os03g61340 LOC_Os02g18850 LOC_Os05g19150 LOC_Os01g15120 LOC_Os01g15130 LOC_Os04g57380 More.. |
| Downstream Genes | LOC_Os09g34860 LOC_Os09g23150 LOC_Os10g35540 LOC_Os10g35520 LOC_Os10g35530 LOC_Os10g35490 LOC_Os12g43970 LOC_Os10g22960 LOC_Os07g42994 LOC_Os07g42140 LOC_Os10g35500 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 osa-miR435 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g41730.1 |
| Rice Genome Annotation | LOC_Os07g41730.1 |
| Ricechip | LOC_Os07g41730.1 |
| KEGG | osa:4343867 dosa:Os07t0608300-01 |
| Entrez-Gene | 4343867 |