RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g41740.1 View Network Show in Genome Browser |
| Other Names | Os07g0608400 |
| Description | PHD finger protein, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25013506-25017814 Nucleotide Length: 837 |
| Protein-coding | LOC_Os07g41740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g07690 LOC_Os06g51450 LOC_Os06g20410 LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 LOC_Os02g52960 LOC_Os01g65600 LOC_Os01g08820 LOC_Os06g12400 LOC_Os02g05450 More.. |
| Downstream Genes | LOC_Os12g34330 LOC_Os12g24540 LOC_Os08g01420 LOC_Os11g18770 LOC_Os09g21770 LOC_Os07g49290 LOC_Os11g05130 LOC_Os08g25799 LOC_Os12g32380 LOC_Os11g41610 LOC_Os08g01080 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g41740.1 |
| Rice Genome Annotation | LOC_Os07g41740.1 |
| Ricechip | LOC_Os07g41740.1 |
| KEGG | osa:4343868 dosa:Os07t0608400-01 |
| Entrez-Gene | 4343868 |