RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g42150.1 View Network Show in Genome Browser |
| Other Names | Os07g0612500 |
| Description | transcription initiation factor IID, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25219509-25223053 Nucleotide Length: 1278 |
| Protein-coding | LOC_Os07g42150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g32750 LOC_Os06g44030 LOC_Os01g63940 LOC_Os05g28010 LOC_Os07g38360 LOC_Os03g53960 LOC_Os01g23630 LOC_Os01g46020 LOC_Os04g54800 LOC_Os03g19870 LOC_Os07g10520 More.. |
| Downstream Genes | LOC_Os09g26180 LOC_Os09g24440 LOC_Os10g28040 LOC_Os08g01770 LOC_Os11g05730 LOC_Os12g39070 LOC_Os08g19140 LOC_Os10g29660 LOC_Os08g21840 LOC_Os12g01060 LOC_Os11g01074 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g42150.1 |
| Rice Genome Annotation | LOC_Os07g42150.1 |
| Ricechip | LOC_Os07g42150.1 |
| KEGG | osa:4343878 dosa:Os07t0612500-00 |
| Entrez-Gene | 4343878 |