RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g42160.1 View Network Show in Genome Browser |
| Other Names | Os07g0613000 |
| Description | HD domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25226231-25229380 Nucleotide Length: 1776 |
| Protein-coding | LOC_Os07g42160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g14040 LOC_Os01g06020 LOC_Os03g20460 LOC_Os01g01920 LOC_Os04g42520 LOC_Os07g30150 LOC_Os07g33240 LOC_Os02g40010 LOC_Os02g51830 LOC_Os03g48660 LOC_Os05g05840 More.. |
| Downstream Genes | LOC_Os12g33100 LOC_Os12g40130 LOC_Os12g39860 LOC_Os09g07820 |
| Pathways | |
|---|---|
| Metacyc Pathways | PPGPPMET-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g42160.1 |
| Rice Genome Annotation | LOC_Os07g42160.1 |
| Ricechip | LOC_Os07g42160.1 |
| KEGG | osa:4343883 dosa:Os07t0613000-01 |
| Entrez-Gene | 4343883 |