RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g42440.1 View Network Show in Genome Browser |
| Other Names | Os07g0616500 |
| Description | hydroxyacid oxidase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25408332-25412212 Nucleotide Length: 1101 |
| Protein-coding | LOC_Os07g42440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g39906 LOC_Os01g48960 LOC_Os06g04510 LOC_Os01g65260 LOC_Os06g15420 LOC_Os03g20470 LOC_Os02g51430 LOC_Os05g35580 LOC_Os04g18010 LOC_Os03g08280 LOC_Os06g09450 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g03900 LOC_Os09g07120 LOC_Os08g02640 LOC_Os11g48080 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn01110 rn00630 rn01120 rn00250 rn00910 rn01210 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 PWY-5043 URSIN-PWY PWY-5044 P121-PWY PWY-181 PWY0-162 GLUTSYN-PWY GLUTAMINEFUM-PWY |
| Reference | |
|---|---|
| PubMed | 22761858 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g42440.1 |
| Rice Genome Annotation | LOC_Os07g42440.1 |
| Ricechip | LOC_Os07g42440.1 |
| KEGG | osa:4343908 dosa:Os07t0616500-01 |
| Entrez-Gene | 4343908 |