RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os07g43180.1 View Network Show in Genome Browser
Other Names	Os07g0624900
Description	SKP1-like protein 1B, putative, expressed
Gene Attributes	Chromosome: Chr7 CDS Coordinates (5'-3'): 25884418-25885020 Nucleotide Length: 603
Protein-coding	LOC_Os07g43180

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0007049	cell cycle	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0019538	protein metabolic process	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005856	cytoskeleton	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005622	intracellular	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g27160 LOC_Os01g43540 LOC_Os01g27150 LOC_Os05g05700 LOC_Os02g15220 LOC_Os02g47870 LOC_Os01g32930 LOC_Os05g13300 LOC_Os01g11580 LOC_Os01g01700 LOC_Os01g50980 More..
Downstream Genes	LOC_Os11g48030 LOC_Os11g42160 LOC_Os10g05800 LOC_Os11g01780 LOC_Os12g36670 LOC_Os12g01760 LOC_Os08g09340

miRNA Regulations
miRNAs	osa-miR5075

Database Links
Gramene	LOC_Os07g43180.1
Rice Genome Annotation	LOC_Os07g43180.1
Ricechip	LOC_Os07g43180.1
KEGG	dosa:Os07t0624900-00