RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g43390.1 View Network Show in Genome Browser |
| Other Names | Os07g0627000 |
| Description | 4-alpha-glucanotransferase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 25980425-25984955 Nucleotide Length: 1785 |
| Protein-coding | LOC_Os07g43390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g51084 LOC_Os02g32660 LOC_Os06g26234 LOC_Os04g33460 LOC_Os03g55090 LOC_Os04g02780 LOC_Os01g65460 LOC_Os04g44650 LOC_Os02g42570 LOC_Os02g10190 LOC_Os05g32710 More.. |
| Downstream Genes | LOC_Os08g32930 LOC_Os09g29404 LOC_Os11g47730 LOC_Os10g30290 LOC_Os08g40930 LOC_Os10g30156 LOC_Os12g24580 LOC_Os08g09230 LOC_Os08g25734 LOC_Os09g12660 LOC_Os10g08474 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | PWY-842 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g43390.1 |
| Rice Genome Annotation | LOC_Os07g43390.1 |
| Ricechip | LOC_Os07g43390.1 |
| KEGG | osa:4343975 dosa:Os07t0627000-01 |
| Entrez-Gene | 4343975 |