RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g43460.1 View Network Show in Genome Browser |
| Other Names | Os07g0627700 |
| Description | sphingolipid C4-hydroxylase SUR2, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 26014754-26017822 Nucleotide Length: 777 |
| Protein-coding | LOC_Os07g43460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47530 LOC_Os03g56820 LOC_Os01g57350 LOC_Os02g12740 LOC_Os03g49480 LOC_Os03g29170 LOC_Os03g21530 LOC_Os05g38360 LOC_Os02g49590 LOC_Os01g01080 LOC_Os02g40870 More.. |
| Downstream Genes | LOC_Os12g43363 LOC_Os11g31640 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1428b osa-miR1428c osa-miR1428d osa-miR1428e-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00627 rn01120 rn00363 rn00624 rn00945 rn01110 rn00903 rn00600 rn01100 rn00905 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g43460.1 |
| Rice Genome Annotation | LOC_Os07g43460.1 |
| Ricechip | LOC_Os07g43460.1 |
| KEGG | osa:4343979 dosa:Os07t0627700-01 |
| Entrez-Gene | 4343979 |