RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g43540.1 View Network Show in Genome Browser |
| Other Names | Os07g0628600 |
| Description | ORC6 - Putative origin recognition complex subunit 6, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 26044540-26047492 Nucleotide Length: 888 |
| Protein-coding | LOC_Os07g43540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08640 LOC_Os01g49010 LOC_Os05g14590 LOC_Os04g10650 LOC_Os01g63710 LOC_Os01g36390 LOC_Os06g08790 LOC_Os02g55410 LOC_Os05g38850 LOC_Os03g02680 LOC_Os03g55200 More.. |
| Downstream Genes | LOC_Os10g26280 LOC_Os12g37400 LOC_Os11g29380 LOC_Os12g03130 LOC_Os11g03430 LOC_Os09g39500 LOC_Os12g13950 LOC_Os10g34820 LOC_Os08g36330 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR408-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g43540.1 |
| Rice Genome Annotation | LOC_Os07g43540.1 |
| Ricechip | LOC_Os07g43540.1 |
| KEGG | osa:4343985 dosa:Os07t0628600-00 |
| Entrez-Gene | 4343985 |