RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g46450.1 View Network Show in Genome Browser |
| Other Names | Os07g0658300 |
| Description | pleckstrin homology domain-containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 27713321-27722663 Nucleotide Length: 2616 |
| Protein-coding | LOC_Os07g46450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g45600 LOC_Os02g20850 LOC_Os07g30300 LOC_Os01g49200 LOC_Os02g58730 LOC_Os02g02840 LOC_Os02g50860 LOC_Os06g12790 LOC_Os05g43820 LOC_Os01g12900 LOC_Os05g18770 More.. |
| Downstream Genes | LOC_Os12g34840 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 rn01120 |
| Metacyc Pathways | PWY-702 HOMOSER-THRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g46450.1 |
| Rice Genome Annotation | LOC_Os07g46450.1 |
| Ricechip | LOC_Os07g46450.1 |
| KEGG | osa:4344163 dosa:Os07t0658300-01 |
| Entrez-Gene | 4344163 |