RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g46460.1 View Network Show in Genome Browser |
| Other Names | Os07g0658400 |
| Description | ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 27723015-27738539 Nucleotide Length: 4848 |
| Protein-coding | LOC_Os07g46460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48200 LOC_Os02g17700 LOC_Os05g35580 LOC_Os06g15420 LOC_Os03g36750 LOC_Os01g65260 LOC_Os01g48960 LOC_Os07g01760 LOC_Os06g12150 LOC_Os02g47020 LOC_Os02g51410 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g03900 LOC_Os10g38850 LOC_Os09g36800 LOC_Os09g39180 LOC_Os11g32320 LOC_Os12g02340 LOC_Os12g02310 LOC_Os11g02424 LOC_Os11g02369 LOC_Os09g27030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5076 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00630 rn00910 |
| Metacyc Pathways | PWY-3282 PWY-4341 PWY-6549 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g46460.1 |
| Rice Genome Annotation | LOC_Os07g46460.1 |
| Ricechip | LOC_Os07g46460.1 |
| KEGG | osa:4344164 dosa:Os07t0658400-02 |
| Entrez-Gene | 4344164 |