RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g46820.1 View Network Show in Genome Browser |
| Other Names | Os07g0663300 |
| Description | CUG-BP- and ETR-3-like factor 5, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 27983214-27987556 Nucleotide Length: 1284 |
| Protein-coding | LOC_Os07g46820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35950 LOC_Os04g37690 LOC_Os01g72834 LOC_Os03g59710 LOC_Os06g20010 LOC_Os02g15310 LOC_Os02g48340 LOC_Os04g53440 LOC_Os04g30430 LOC_Os03g05830 LOC_Os02g52140 More.. |
| Downstream Genes | LOC_Os10g33230 LOC_Os09g37720 LOC_Os08g38410 LOC_Os12g43600 LOC_Os08g09100 LOC_Os09g29980 LOC_Os12g38430 LOC_Os07g47630 LOC_Os08g09350 LOC_Os11g01020 LOC_Os08g23120 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6254 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g46820.1 |
| Rice Genome Annotation | LOC_Os07g46820.1 |
| Ricechip | LOC_Os07g46820.1 |
| KEGG | osa:4344194 dosa:Os07t0663300-02 |
| Entrez-Gene | 4344194 |