RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g47290.1 View Network Show in Genome Browser |
| Other Names | Os07g0669100 |
| Description | xylose isomerase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 28272314-28276634 Nucleotide Length: 1440 |
| Protein-coding | LOC_Os07g47290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g44660 LOC_Os07g22650 |
| Downstream Genes | LOC_Os12g43664 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00040 rn01100 rn00051 |
| Metacyc Pathways | XYLCAT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g47290.1 |
| Rice Genome Annotation | LOC_Os07g47290.1 |
| Ricechip | LOC_Os07g47290.1 |
| KEGG | osa:4344231 dosa:Os07t0669100-01 |
| Entrez-Gene | 4344231 |