RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g48090.1 View Network Show in Genome Browser |
| Other Names | Os07g0678300 |
| Description | CAMK_KIN1/SNF1/Nim1_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 28710749-28712891 Nucleotide Length: 1332 |
| Protein-coding | LOC_Os07g48090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g44210 LOC_Os07g32380 LOC_Os02g05630 LOC_Os06g48300 LOC_Os04g31270 LOC_Os06g33530 LOC_Os02g12600 LOC_Os03g07300 LOC_Os04g52000 LOC_Os06g33549 LOC_Os02g55560 More.. |
| Downstream Genes | LOC_Os09g30100 LOC_Os09g32810 LOC_Os10g39540 LOC_Os09g38550 LOC_Os10g41480 LOC_Os08g37790 LOC_Os08g27490 LOC_Os08g27824 LOC_Os12g33100 LOC_Os11g13820 LOC_Os08g37780 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6249a osa-miR6249b |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g48090.1 |
| Rice Genome Annotation | LOC_Os07g48090.1 |
| Ricechip | LOC_Os07g48090.1 |
| KEGG | osa:4344285 dosa:Os07t0678300-01 |
| Entrez-Gene | 4344285 |