RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01130.1 View Network Show in Genome Browser |
| Other Names | Os08g0101600 |
| Description | flap endonuclease, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 87245-91948 Nucleotide Length: 1926 |
| Protein-coding | LOC_Os08g01130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56940 LOC_Os03g15033 LOC_Os08g01120 LOC_Os03g12610 LOC_Os01g39630 LOC_Os06g16290 LOC_Os07g48300 LOC_Os03g21550 LOC_Os02g01560 LOC_Os01g25610 LOC_Os03g08280 More.. |
| Downstream Genes | LOC_Os11g40140 LOC_Os09g36440 LOC_Os12g21798 LOC_Os09g32532 LOC_Os09g32520 LOC_Os09g32500 LOC_Os08g41300 LOC_Os11g29190 LOC_Os10g29660 LOC_Os09g36710 LOC_Os08g01620 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1857-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01130.1 |
| Rice Genome Annotation | LOC_Os08g01130.1 |
| Ricechip | LOC_Os08g01130.1 |
| KEGG | osa:4344420 dosa:Os08t0101600-01 |
| Entrez-Gene | 4344420 |