RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01180.1 View Network Show in Genome Browser |
| Other Names | Os08g0102100 |
| Description | nicalin, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 115025-121121 Nucleotide Length: 1668 |
| Protein-coding | LOC_Os08g01180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g50990 LOC_Os02g47140 LOC_Os04g02820 LOC_Os02g32030 LOC_Os01g19470 LOC_Os05g06310 LOC_Os02g50360 LOC_Os01g53900 LOC_Os04g53770 LOC_Os01g51020 LOC_Os02g43020 More.. |
| Downstream Genes | LOC_Os08g10450 LOC_Os12g03090 LOC_Os11g03400 LOC_Os10g37630 LOC_Os09g38030 LOC_Os10g41590 LOC_Os10g27174 LOC_Os12g07110 LOC_Os09g34040 LOC_Os08g15080 LOC_Os10g37210 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01180.1 |
| Rice Genome Annotation | LOC_Os08g01180.1 |
| Ricechip | LOC_Os08g01180.1 |
| KEGG | osa:4344424 dosa:Os08t0102100-01 |
| Entrez-Gene | 4344424 |