RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01420.1 View Network Show in Genome Browser |
| Other Names | Os08g0105000 |
| Description | PHD-finger domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 272854-276978 Nucleotide Length: 1692 |
| Protein-coding | LOC_Os08g01420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g41740 LOC_Os07g12910 LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 LOC_Os02g52960 LOC_Os01g65600 LOC_Os01g66420 LOC_Os05g01230 |
| Downstream Genes | LOC_Os11g14010 LOC_Os09g21770 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR156f-3p osa-miR156h-3p osa-miR156l-3p |
| Reference | |
|---|---|
| PubMed | 21284756 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01420.1 |
| Rice Genome Annotation | LOC_Os08g01420.1 |
| Ricechip | LOC_Os08g01420.1 |
| KEGG | osa:4344443 dosa:Os08t0105000-01 |
| Entrez-Gene | 4344443 |