RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01620.1 View Network Show in Genome Browser |
| Other Names | Os08g0107500 |
| Description | shwachman-Bodian-Diamond syndrome protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 367761-370978 Nucleotide Length: 1074 |
| Protein-coding | LOC_Os08g01620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44780 LOC_Os03g08280 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os05g41180 LOC_Os01g59600 LOC_Os07g42260 LOC_Os02g04100 LOC_Os03g26970 LOC_Os02g42320 More.. |
| Downstream Genes | LOC_Os11g40140 LOC_Os08g43540 LOC_Os09g36710 LOC_Os09g07820 LOC_Os12g34510 LOC_Os08g33100 LOC_Os08g02360 LOC_Os08g03450 LOC_Os12g21500 LOC_Os11g20689 LOC_Os11g29190 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01620.1 |
| Rice Genome Annotation | LOC_Os08g01620.1 |
| Ricechip | LOC_Os08g01620.1 |
| KEGG | osa:4344458 dosa:Os08t0107500-01 |
| Entrez-Gene | 4344458 |