RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01940.1 View Network Show in Genome Browser |
| Other Names | Os08g0111200 |
| Description | non-lysosomal glucosylceramidase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 580197-586463 Nucleotide Length: 2787 |
| Protein-coding | LOC_Os08g01940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48820 LOC_Os01g48170 LOC_Os01g48180 LOC_Os01g08700 LOC_Os01g27140 |
| Downstream Genes | LOC_Os09g31970 LOC_Os08g40180 LOC_Os08g27070 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275a osa-miR2275b |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01940.1 |
| Rice Genome Annotation | LOC_Os08g01940.1 |
| Ricechip | LOC_Os08g01940.1 |
| KEGG | osa:4344485 dosa:Os08t0111200-01 |
| Entrez-Gene | 4344485 |