RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g03290.1 View Network Show in Genome Browser |
| Other Names | Os08g0126300 |
| Description | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 1525295-1529228 Nucleotide Length: 1014 |
| Protein-coding | LOC_Os08g03290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g45710 LOC_Os02g07260 LOC_Os06g14740 LOC_Os05g41640 LOC_Os01g58610 LOC_Os02g51590 LOC_Os02g38920 LOC_Os04g40950 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 More.. |
| Downstream Genes | LOC_Os09g20820 LOC_Os10g30550 LOC_Os11g14220 LOC_Os09g30418 LOC_Os09g30412 LOC_Os11g09280 LOC_Os08g13930 LOC_Os08g39140 LOC_Os09g36450 LOC_Os08g43640 LOC_Os08g04460 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00300 rn01100 rn01110 rn01120 rn00010 rn00710 |
| Metacyc Pathways | DAPLYSINESYN-PWY PWY-5097 PWY-2941 P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Reference | |
|---|---|
| PubMed | 22903596 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g03290.1 |
| Rice Genome Annotation | LOC_Os08g03290.1 |
| Ricechip | LOC_Os08g03290.1 |
| KEGG | osa:4344564 dosa:Os08t0126300-01 |
| Entrez-Gene | 4344564 |