RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g03390.2 View Network Show in Genome Browser |
| Other Names | Os08g0127700 |
| Description | pre-mRNA-splicing factor SLU7, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 1585126-1588227 Nucleotide Length: 1422 |
| Protein-coding | LOC_Os08g03390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g09290 LOC_Os02g54340 LOC_Os02g21970 LOC_Os05g41180 LOC_Os07g32430 LOC_Os03g27970 LOC_Os01g59600 LOC_Os05g07050 LOC_Os04g28090 LOC_Os02g08480 LOC_Os02g19860 More.. |
| Downstream Genes | LOC_Os08g43640 LOC_Os09g37000 LOC_Os10g39820 LOC_Os10g29560 LOC_Os09g36710 LOC_Os08g43540 LOC_Os11g14220 LOC_Os12g31810 LOC_Os09g32020 LOC_Os09g39590 LOC_Os08g40610 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g03390.2 |
| Rice Genome Annotation | LOC_Os08g03390.2 |
| Ricechip | LOC_Os08g03390.2 |
| KEGG | osa:4344572 dosa:Os08t0127700-01 |
| Entrez-Gene | 4344572 |