RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g03640.1 View Network Show in Genome Browser |
| Other Names | Os08g0130500 |
| Description | 60S acidic ribosomal protein P0, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 1720406-1723139 Nucleotide Length: 960 |
| Protein-coding | LOC_Os08g03640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08440 LOC_Os01g49290 LOC_Os03g22180 LOC_Os01g67134 LOC_Os07g47780 LOC_Os04g28180 LOC_Os03g58204 LOC_Os07g42450 LOC_Os07g08330 LOC_Os02g28810 LOC_Os06g02510 More.. |
| Downstream Genes | LOC_Os09g32976 LOC_Os08g23710 LOC_Os11g11390 LOC_Os12g38000 LOC_Os11g29190 LOC_Os12g05430 LOC_Os08g44450 LOC_Os11g03400 LOC_Os08g44380 LOC_Os09g31180 LOC_Os12g03090 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5833 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g03640.1 |
| Rice Genome Annotation | LOC_Os08g03640.1 |
| Ricechip | LOC_Os08g03640.1 |
| KEGG | osa:4344590 dosa:Os08t0130500-01 |
| Entrez-Gene | 4344590 |