RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g04270.2 View Network Show in Genome Browser |
| Other Names | Os08g0137100 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 2077234-2083327 Nucleotide Length: 1131 |
| Protein-coding | LOC_Os08g04270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g16390 LOC_Os03g19480 LOC_Os06g38470 LOC_Os04g08034 LOC_Os02g39800 LOC_Os03g43890 LOC_Os06g08800 LOC_Os03g12860 LOC_Os03g60110 LOC_Os07g12490 LOC_Os05g40290 More.. |
| Downstream Genes | LOC_Os08g23680 LOC_Os08g38570 LOC_Os09g13630 LOC_Os10g01470 LOC_Os08g34370 LOC_Os08g36220 LOC_Os09g27450 LOC_Os09g10930 LOC_Os10g41230 LOC_Os10g39720 LOC_Os09g06680 More.. |
| Reference | |
|---|---|
| PubMed | 19825651 23505380 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g04270.2 |
| Rice Genome Annotation | LOC_Os08g04270.2 |
| Ricechip | LOC_Os08g04270.2 |
| KEGG | osa:4344620 dosa:Os08t0137100-01 |
| Entrez-Gene | 4344620 |