RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g04540.1 View Network Show in Genome Browser |
| Other Names | Os08g0140300 |
| Description | decarboxylase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 2256007-2257920 Nucleotide Length: 1545 |
| Protein-coding | LOC_Os08g04540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01080 LOC_Os02g24614 LOC_Os03g52400 LOC_Os03g17580 LOC_Os05g49320 LOC_Os06g40950 LOC_Os05g48050 LOC_Os01g73430 |
| Downstream Genes | LOC_Os12g01710 LOC_Os12g16720 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00350 rn00950 rn00965 rn01100 rn01110 |
| Metacyc Pathways | PWY-3581 PWY-6133 PWY-5474 PWY-5254 |
| Reference | |
|---|---|
| PubMed | 17763868 19439571 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g04540.1 |
| Rice Genome Annotation | LOC_Os08g04540.1 |
| Ricechip | LOC_Os08g04540.1 |
| KEGG | osa:4344636 dosa:Os08t0140300-01 |
| Entrez-Gene | 4344636 |