RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g06050.1 View Network Show in Genome Browser |
| Other Names | Os08g0156900 |
| Description | OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 3301039-3304257 Nucleotide Length: 1158 |
| Protein-coding | LOC_Os08g06050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g33850 LOC_Os03g01900 LOC_Os03g05980 LOC_Os08g01620 LOC_Os02g01560 LOC_Os01g25610 LOC_Os07g04850 LOC_Os03g38000 LOC_Os02g57590 LOC_Os03g18410 LOC_Os02g01332 More.. |
| Downstream Genes | LOC_Os09g10770 LOC_Os09g31180 LOC_Os10g27190 LOC_Os11g29190 LOC_Os11g38959 LOC_Os12g21798 LOC_Os11g06750 LOC_Os12g07010 LOC_Os09g36440 LOC_Os10g29660 LOC_Os11g40140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g06050.1 |
| Rice Genome Annotation | LOC_Os08g06050.1 |
| Ricechip | LOC_Os08g06050.1 |
| KEGG | osa:4344697 dosa:Os08t0156900-01 |
| Entrez-Gene | 4344697 |