RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g06250.1 View Network Show in Genome Browser |
| Other Names | Os08g0159100 |
| Description | tetraspanin family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 3443460-3447044 Nucleotide Length: 837 |
| Protein-coding | LOC_Os08g06250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48740 LOC_Os01g33080 LOC_Os07g38610 LOC_Os03g18454 LOC_Os06g43700 LOC_Os06g42720 LOC_Os02g09810 LOC_Os03g62200 LOC_Os03g06139 LOC_Os04g30490 LOC_Os01g65000 More.. |
| Downstream Genes | LOC_Os12g01420 LOC_Os11g32240 LOC_Os11g01410 LOC_Os10g11354 LOC_Os11g40140 LOC_Os10g20450 LOC_Os10g20470 LOC_Os10g20350 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2093-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g06250.1 |
| Rice Genome Annotation | LOC_Os08g06250.1 |
| Ricechip | LOC_Os08g06250.1 |
| KEGG | osa:4344712 dosa:Os08t0159100-01 |
| Entrez-Gene | 4344712 |