RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g06630.1 View Network Show in Genome Browser |
| Other Names | Os08g0163400 |
| Description | RNA polymerase sigma factor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 3732441-3736521 Nucleotide Length: 1563 |
| Protein-coding | LOC_Os08g06630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47850 LOC_Os02g09590 LOC_Os01g38970 LOC_Os03g63950 |
| Reference | |
|---|---|
| PubMed | 17651366 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g06630.1 |
| Rice Genome Annotation | LOC_Os08g06630.1 |
| Ricechip | LOC_Os08g06630.1 |
| KEGG | osa:4344738 dosa:Os08t0163400-01 |
| Entrez-Gene | 4344738 |