RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g07540.1 View Network Show in Genome Browser |
| Other Names | Os08g0172200 |
| Description | hemimethylated DNA binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 4237010-4242585 Nucleotide Length: 1005 |
| Protein-coding | LOC_Os08g07540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45750 LOC_Os01g13390 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1428a-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Metacyc Pathways | PROSYN-PWY PROLINE-SYN2-PWY CITRULBIO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g07540.1 |
| Rice Genome Annotation | LOC_Os08g07540.1 |
| Ricechip | LOC_Os08g07540.1 |
| KEGG | osa:4344777 dosa:Os08t0172200-01 |
| Entrez-Gene | 4344777 |