RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g07840.1 View Network Show in Genome Browser |
| Other Names | Os08g0175300 |
| Description | PolI-like DNA polymerase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 4390729-4400757 Nucleotide Length: 3102 |
| Protein-coding | LOC_Os08g07840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g02180 LOC_Os04g03990 LOC_Os01g38620 LOC_Os07g32890 LOC_Os05g28860 LOC_Os07g26930 LOC_Os01g25880 LOC_Os03g60180 LOC_Os06g43610 LOC_Os03g13000 LOC_Os01g53150 More.. |
| Downstream Genes | LOC_Os10g30100 LOC_Os08g21330 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2923 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00230 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g07840.1 |
| Rice Genome Annotation | LOC_Os08g07840.1 |
| Ricechip | LOC_Os08g07840.1 |
| KEGG | osa:4344789 dosa:Os08t0175300-01 |
| Entrez-Gene | 4344789 |