RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g08030.1 View Network Show in Genome Browser |
| Other Names | Os08g0177600 |
| Description | double-strand break repair protein MRE11, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 4551510-4557530 Nucleotide Length: 1848 |
| Protein-coding | LOC_Os08g08030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54091 LOC_Os04g49860 LOC_Os02g29464 LOC_Os05g08790 LOC_Os07g08729 LOC_Os05g46030 LOC_Os01g01689 LOC_Os07g30980 LOC_Os02g48010 LOC_Os01g49690 LOC_Os01g65580 More.. |
| Downstream Genes | LOC_Os11g40150 LOC_Os12g31370 LOC_Os09g03370 LOC_Os10g36060 LOC_Os11g48090 LOC_Os09g21770 LOC_Os10g28610 LOC_Os11g04954 LOC_Os12g04980 LOC_Os08g32620 LOC_Os12g25120 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396c-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g08030.1 |
| Rice Genome Annotation | LOC_Os08g08030.1 |
| Ricechip | LOC_Os08g08030.1 |
| KEGG | dosa:Os08t0177600-00 |