RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g09350.1 View Network Show in Genome Browser |
| Other Names | Os08g0192900 |
| Description | gar2, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 5422258-5426674 Nucleotide Length: 1719 |
| Protein-coding | LOC_Os08g09350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56390 LOC_Os02g57590 LOC_Os05g08360 LOC_Os03g22880 LOC_Os02g37000 LOC_Os07g10350 LOC_Os03g58810 LOC_Os02g32120 LOC_Os04g36890 LOC_Os03g58430 LOC_Os03g22740 More.. |
| Downstream Genes | LOC_Os09g19560 LOC_Os11g37080 LOC_Os10g26660 LOC_Os12g29660 LOC_Os09g02700 LOC_Os08g44530 LOC_Os12g03822 LOC_Os11g03990 LOC_Os12g07010 LOC_Os10g41470 LOC_Os11g14990 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g09350.1 |
| Rice Genome Annotation | LOC_Os08g09350.1 |
| Ricechip | LOC_Os08g09350.1 |
| KEGG | osa:4344865 dosa:Os08t0192900-01 |
| Entrez-Gene | 4344865 |