RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g09690.1 View Network Show in Genome Browser |
| Other Names | Os08g0196700 |
| Description | nuclear transcription factor Y subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 5597554-5601329 Nucleotide Length: 582 |
| Protein-coding | LOC_Os08g09690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38820 LOC_Os01g61810 LOC_Os06g45640 LOC_Os02g07450 LOC_Os03g14669 LOC_Os05g49780 LOC_Os03g21900 LOC_Os08g07740 LOC_Os07g41580 LOC_Os01g53450 LOC_Os03g29970 More.. |
| Downstream Genes | LOC_Os09g30310 LOC_Os08g38780 LOC_Os10g41150 LOC_Os08g10560 LOC_Os10g39620 LOC_Os09g39220 LOC_Os09g35790 LOC_Os09g27420 LOC_Os11g20384 LOC_Os10g28340 LOC_Os10g41930 More.. |
| Reference | |
|---|---|
| PubMed | 18193457 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g09690.1 |
| Rice Genome Annotation | LOC_Os08g09690.1 |
| Ricechip | LOC_Os08g09690.1 |
| KEGG | osa:4344874 dosa:Os08t0196700-01 |
| Entrez-Gene | 4344874 |