RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os08g12680.1 View Network Show in Genome Browser
Other Names	Os08g0223833,Os08g0223700,Os08g0223766
Description	zinc finger domain, LSD1 subclass family protein, expressed
Gene Attributes	Chromosome: Chr8 CDS Coordinates (5'-3'): 7488653-7510517 Nucleotide Length: 4365
Protein-coding	LOC_Os08g12680

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os05g14590
Downstream Genes	LOC_Os11g18880

miRNA Regulations
miRNAs	osa-miR5150-3p

Database Links
Gramene	LOC_Os08g12680.1
Rice Genome Annotation	LOC_Os08g12680.1
Ricechip	LOC_Os08g12680.1
KEGG	osa:4344965 dosa:Os08t0223833-00 dosa:Os08t0223700-00 dosa:Os08t0223766-00