RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os08g15030.1 View Network Show in Genome Browser |
Other Names | Os08g0248800 |
Description | aspartate carbamoyltransferase, putative, expressed |
Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 9071639-9075883 Nucleotide Length: 1092 |
Protein-coding | LOC_Os08g15030 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0007154 | cell communication | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0005488 | binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0016740 | transferase activity | Molecular Function | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os06g03790 LOC_Os06g05090 LOC_Os02g37000 LOC_Os06g35470 LOC_Os04g28060 LOC_Os02g47180 LOC_Os01g54370 LOC_Os01g59340 LOC_Os04g41300 LOC_Os01g33030 LOC_Os04g48710 More.. |
Downstream Genes | LOC_Os08g16130 LOC_Os10g32550 LOC_Os10g30640 LOC_Os09g39780 LOC_Os10g40650 LOC_Os12g33100 LOC_Os09g19560 LOC_Os09g32810 LOC_Os10g41410 LOC_Os09g30100 LOC_Os12g38000 More.. |
Pathways | |
---|---|
KEGG Pathways | rn00240 rn00250 rn01100 |
Metacyc Pathways | PWY-5 PWY-4981 ARGSYNBSUB-PWY PWY-4984 ARGININE-SYN4-PWY ARGSYN-PWY CITRULLINE-DEG-PWY CITRULBIO-PWY PWY0-162 |
Database Links | |
---|---|
Gramene | LOC_Os08g15030.1 |
Rice Genome Annotation | LOC_Os08g15030.1 |
Ricechip | LOC_Os08g15030.1 |
KEGG | osa:4345071 dosa:Os08t0248800-01 |
Entrez-Gene | 4345071 |