RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g15080.1 View Network Show in Genome Browser |
| Other Names | Os08g0249400 |
| Description | proline rich protein 3, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 9123560-9127609 Nucleotide Length: 1008 |
| Protein-coding | LOC_Os08g15080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g14040 LOC_Os03g18270 LOC_Os03g18264 LOC_Os05g22960 LOC_Os07g12490 LOC_Os03g60110 LOC_Os03g63090 LOC_Os05g40290 LOC_Os01g60260 LOC_Os06g25500 LOC_Os06g25470 More.. |
| Downstream Genes | LOC_Os08g19310 LOC_Os12g13290 LOC_Os09g27970 LOC_Os10g41430 LOC_Os11g07500 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g15080.1 |
| Rice Genome Annotation | LOC_Os08g15080.1 |
| Ricechip | LOC_Os08g15080.1 |
| KEGG | osa:4345075 dosa:Os08t0249400-01 |
| Entrez-Gene | 4345075 |